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Structural Characterization of Peptide Antibodies

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Authors:
  • Chailyan, Anna ;
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    University of Southern Denmark
  • Marcatili, Paolo
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    Immunological Bioinformatics, Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark
Editor:
Houen, Gunnar
DOI:
10.1007/978-1-4939-2999-3_18
Abstract:
The role of proteins as very effective immunogens for the generation of antibodies is indisputable. Nevertheless, cases in which protein usage for antibody production is not feasible or convenient compelled the creation of a powerful alternative consisting of synthetic peptides. Synthetic peptides can be modified to obtain desired properties or conformation, tagged for purification, isotopically labeled for protein quantitation or conjugated to immunogens for antibody production. The antibodies that bind to these peptides represent an invaluable tool for biological research and discovery. To better understand the underlying mechanisms of antibody-antigen interaction here we present a pipeline developed by us to structurally classify immunoglobulin antigen binding sites and to infer key sequence residues and other variables that have a prominent role in each structural class.
ISBN:
9781493929986, 9781493929993
Type:
Book chapter
Language:
English
Published in:
Methods in Molecular Biology: Methods and Protocols, 2015, p. 205-214
Keywords:
Clustering; Linear epitope; Peptide antibody; Structure
Main Research Area:
Science/technology
Publication Status:
Published
Series:
Methods in Molecular Biology
Review type:
Peer Review
Publisher:
Springer
Submission year:
2015
Scientific Level:
Scientific
ID:
2282468780

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