- Authors:
-
-
Andersson, Robin
;
Close
0000-0003-1516-879X
Computational and RNA Biology, Department of Biology, Faculty of Science, Københavns Universitet - Refsing Andersen, Peter ;
- Valen, Eivind ;
- Core, Leighton J. ;
- Lange, Jette Bornholdt ;
- Boyd, Mette ;
- Jensen, Torben Heick ;
-
Sandelin, Albin Gustav
Close0000-0002-7109-7378
Computational and RNA Biology, Department of Biology, Faculty of Science, Københavns Universitet
-
Andersson, Robin
;
- DOI:
- 10.1038/ncomms6336
- Abstract:
- Mammalian genomes are pervasively transcribed, yielding a complex transcriptome with high variability in composition and cellular abundance. Although recent efforts have identified thousands of new long non-coding (lnc) RNAs and demonstrated a complex transcriptional repertoire produced by protein-coding (pc) genes, limited progress has been made in distinguishing functional RNA from spurious transcription events. This is partly due to present RNA classification, which is typically based on technical rather than biochemical criteria. Here we devise a strategy to systematically categorize human RNAs by their sensitivity to the ribonucleolytic RNA exosome complex and by the nature of their transcription initiation. These measures are surprisingly effective at correctly classifying annotated transcripts, including lncRNAs of known function. The approach also identifies uncharacterized stable lncRNAs, hidden among a vast majority of unstable transcripts. The predictive power of the approach promises to streamline the functional analysis of known and novel RNAs.
- Type:
- Journal article
- Language:
- English
- Published in:
- Nature Communications, 2014, Vol 5, p. 1-10
- Main Research Area:
- Science/technology
- Publication Status:
- Published
- Review type:
- Peer Review
- Submission year:
- 2014
- Scientific Level:
- Scientific
- ID:
- 272712282
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